Inframolecular acid–base and coordination properties towards Na+ and Mg2+ of myo-inositol 1,3,4,5,6-pentakisphosphate: a structural approach to biologically relevant species† †Electronic supplementary information (ESI) available: Application of the Cluster Expansion Method (Table S1); 31P NMR spectra (Fig. S1); Structural details of Ins(1,3,4,5,6)P 5–Mg2+ interaction (Fig. S2); Comparative fit of alternative chemical models for the Ins(1,3,4,5,6)P 5–Na+ system (Fig. S3). See DOI: 10.1039/c2dt31807e Click here for additional data file.
نویسندگان
چکیده
The myo-inositol phosphates (InsPs) are specific signalling metabolites ubiquitous in eukaryotic cells. Although Ins(1,3,4,5,6)P(5) is the second most abundant member of the InsPs family, its certain biological roles are far from being elucidated, in part due to the large number of species formed by Ins(1,3,4,5,6)P(5) in the presence of metal ions. In light of this, we have strived in the past to make a complete and at the same time "biological-user-friendly" description of the Ins(1,3,4,5,6)P(5) chemistry with mono and multivalent cations. In this work we expand these studies focusing on the inframolecular aspects of its protonation equilibria and the microscopic details of its coordination behaviour towards biologically relevant metal ions. We present here a systematic study of the Ins(1,3,4,5,6)P(5) intrinsic acid-base processes, in a non-interacting medium, and over a wide pH range, analyzing the (31)P NMR curves by means of a model based on the Cluster Expansion Method. In addition, we have used a computational approach to analyse the energetic and structural features of the protonation and conformational changes of Ins(1,3,4,5,6)P(5), and how they are influenced by the presence of two physiologically relevant cations, Na(+) and Mg(2+).
منابع مشابه
Inframolecular acid – base and coordination properties towards Na + and Mg 2 + of myo - inositol 1 , 3 , 4 , 5 , 6 - pentakisphosphate : a structural approach to biologically relevant species †
The myo-inositol phosphates (InsPs) are specific signalling metabolites ubiquitous in eukaryotic cells. Although Ins(1,3,4,5,6)P5 is the second most abundant member of the InsPs family, its certain biological roles are far from being elucidated, in part due to the large number of species formed by Ins(1,3,4,5,6)P5 in the presence of metal ions. In light of this, we have strived in the past to m...
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1Chemical Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA 2Department of Chemistry, University of California – Berkeley, Berkeley, CA 94720, USA 3Advanced Light Source, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA 4National Security Directorate, Pacific Northwest National Laboratory, 902 Battelle Blvd., Rich...
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PCFM Lab, GD HPPC Lab, Guangdong Eng High-performance Organic and Polymer P Laboratory of Opto-electronic Material and Chemical Engineering, Sun Yet-sen Univers [email protected]; [email protected] 20 84112222; Tel: +86 20 84112712 State Key Laboratory of Optoelectronic Mat and Engineering, Sun Yat-sen University, Gu Shenzhen China Star Optoelectronics Techn TCL Corporate Research, Guangdon...
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Experimental Section Figure S1. 1H NMR spectrum of {Na(12-C-4)2}{(PNP)Ni-η-COO-κC} (3). Figure S2. 13C NMR spectrum of {Na(12-C-4)2}{(PNP)Ni-η-COO-κC} (3). Figure S3. 31P NMR spectrum of {Na(12-C-4)2}{(PNP)Ni-η-COO-κC} (3). Figure S4. 1H NMR spectrum of (PNP)Ni-μ-CO2-κC:κO,O’-Fe(PNP) (5). Figure S5. Solid-state structure of 3. Table S1. Selected bond distances and angles for 3. Figure S6. Solid...
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